Publikationer
- Cells, vol. 8 8 DOI Mer information (2019). Biochemical Differences in Cerebrospinal Fluid between Secondary Progressive and Relapsing⁻Remitting Multiple Sclerosis..
- SLAS discovery : advancing life sciences R & D DOI Mer information (2019). Transfer Learning with Deep Convolutional Neural Networks for Classifying Cellular Morphological Changes..
- Bioinformatics, vol. 35 DOI Mer information (2019). Container-based bioinformatics with Pachyderm.
- GigaScience, vol. 8 DOI Mer information (2019). PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud.
- Journal of Cheminformatics, vol. 10 DOI Mer information (2018). Efficient iterative virtual screening with Apache Spark and conformal prediction..
- GigaScience, vol. 7 DOI Mer information (2018). Tracking the NGS revolution: managing life science research on shared high-performance computing clusters.
- Toxicology Letters, vol. 295, ss. S104-S104 DOI Mer information (2018). OpenRiskNet, an open e-infrastructure to support data sharing, knowledge integration and in silico analysis and modelling in risk assessment.
- Toxicology Letters, vol. 295, ss. S203-S203 DOI Mer information (2018). Exploring the usefulness of morphological profiling of cells to study toxicity mechanisms.
- Cytometry Part A DOI Mer information (2018). Deep Learning in Image Cytometry: A Review..
- Theranostics, vol. 8, ss. 4477-4490 DOI Mer information (2018). Integration of magnetic resonance imaging and protein and metabolite CSF measurements to enable early diagnosis of secondary progressive multiple sclerosis..
- Journal of Cheminformatics, . vol. 10 DOI Mer information (2018). Evaluating parameters for ligand-based modeling with random forest on sparse data sets.
- Frontiers in Pharmacology, vol. 9 DOI Mer information (2018). Predicting off-target binding profiles with confidence using Conformal Prediction.
- DOI Mer information (2018). SciPipe - A workflow library for agile development of complex and dynamic bioinformatics pipelines.
- Journal of Cheminformatics, vol. 10 DOI Mer information (2018). A confidence predictor for logD using conformal regression and a support-vector machine.
- Abstract of Papers of the American Chemical Society, vol. 255 Mer information (2018). OpenRiskNet, an open e-infrastructure to support data sharing, knowledge integration, in silico analysis and modelling in risk assessment.
- Journal of Cheminformatics, . vol. 10 DOI Mer information (2018). Novel applications of Machine Learning in cheminformatics.
- Journal of Chemical Information and Modeling, vol. 58, ss. 1132-1140 DOI Mer information (2018). Conformal Regression for Quantitative Structure-Activity Relationship Modeling-Quantifying Prediction Uncertainty.
- Scandinavian Journal of Immunology, . vol. 86, ss. 31-39 DOI Mer information (2017). Melanocortin 2, 3 and 4 Receptor Gene Expressions are Downregulated in CD8(+) T Cytotoxic Lymphocytes and CD19(+) B Lymphocytes in Rheumatoid Arthritis Responding to TNF-alfa Inhibition.
- Journal of Cheminformatics, vol. 9 DOI Mer information (2017). Large-scale virtual screening on public cloud resources with Apache Spark.
- Metabolomics, vol. 13 DOI Mer information (2017). Mass spectrometry based metabolomics for in vitro systems pharmacology: pitfalls, challenges, and computational solutions..
- Journal of Biomedical Semantics, vol. 8 DOI Mer information (2017). RDFIO: extending Semantic MediaWiki for interoperable biomedical data management.
- Journal of Chemistry . DOI Mer information (2017). CryoProtect: A Web Server for Classifying Antifreeze Proteins from Nonantifreeze Proteins.
- Current drug metabolism, vol. 18, ss. 540-555 DOI Mer information (2017). Towards Predicting the Cytochrome P450 Modulation: From QSAR to proteochemometric modeling..
- RSC Advances, vol. 7, ss. 35119-35134 DOI Mer information (2017). PepBio: predicting the bioactivity of host defense peptides.
- JAMIA Journal of the American Medical Informatics Association, . vol. 24, ss. 950-957 DOI Mer information (2017). E-Science technologies in a workflow for personalized medicine using cancer screening as a case study.
- F1000 Research, vol. 6 DOI Mer information (2017). The future of metabolomics in ELIXIR..
- Journal of Cheminformatics, vol. 9 DOI Mer information (2017). The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching.
- Future Medicinal Chemistry, . vol. 9, ss. 275-291 DOI Mer information (2017). HemoPred: a web server for predicting the hemolytic activity of peptides.
- Journal of Cheminformatics, vol. 8 DOI Mer information (2016). Large-scale ligand-based predictive modelling using support vector machines.
- Annals of the Rheumatic Diseases, . vol. 75, ss. 904-904 DOI Mer information (2016). Resistin Gene Transcription Is Regulated in Adaptive and Innate Immunity in Rheumatoid Arthritis.
- Annals of the Rheumatic Diseases, . vol. 75, ss. 903-904 DOI Mer information (2016). The Melanocortin System Is Responsive in Disease Driving Immune Cells in Rheumatoid Arthritis and May Offer A Pathway To Curative Treatment.
- Planta Medica, vol. 82, ss. 1087-1095 DOI Mer information (2016). New Polyfunctional Phragmalin Limonoids from Neobeguea mahafalensis.
- Journal of Cheminformatics, vol. 8 DOI Mer information (2016). Towards agile large-scale predictive modelling in drug discovery with flow-based programming design principles.
- Scandinavian Journal of Immunology, vol. 84, ss. 229-236 DOI Mer information (2016). Resistin Gene Expression is Downregulated in CD4(+) T Helper Lymphocytes and CD14(+) Monocytes in Rheumatoid Arthritis Responding to TNF-alpha Inhibition.
- Chemometrics and Intelligent Laboratory Systems, vol. 151, ss. 219-227 DOI Mer information (2016). Extending proteochemometric modeling for unraveling the sorption behavior of compound-soil interaction.
- PeerJ, vol. 4 DOI Mer information (2016). Probing the origins of human acetylcholinesterase inhibition via QSAR modeling and molecular docking.
- Journal of Cheminformatics, vol. 8 DOI Mer information (2016). osFP: a web server for predicting the oligomeric states of fluorescent proteins.
- PeerJ, vol. 4 DOI Mer information (2016). Origin of aromatase inhibitory activity via proteochemometric modeling.
- GigaScience, vol. 5 DOI Mer information (2016). Recommendations on e-infrastructures for next-generation sequencing.
- European Journal of Human Genetics, vol. 24, ss. 521-528 DOI Mer information (2016). Harmonising and linking biomedical and clinical data across disparate data archives to enable integrative cross-biobank research.
- Journal of Cheminformatics, vol. 8 DOI Mer information (2016). XMetDB: an open access database for xenobiotic metabolism.
- Bioinformatics and Biology Insights, vol. 9, ss. 125-128 DOI Mer information (2015). BioImg.org: A catalog of virtual machine images for the life sciences.
- Annals of Mathematics and Artificial Intelligence, vol. 74, ss. 117-132 DOI Mer information (2015). The application of conformal prediction to the drug discovery process.
- Journal of medical and bioengineering, vol. 4, ss. 117-125 DOI Mer information (2015). Privacy-Preservation for Publishing Sample Availability Data with Personal Identifiers.
- ATLA (Alternatives to Laboratory Animals), vol. 43, ss. 325-332 Mer information (2015). Toward the Replacement of Animal Experiments through the Bioinformatics-driven Analysis of 'Omics' Data from Human Cell Cultures.
- Journal of Computer-Aided Molecular Design, vol. 29, ss. 127-141 DOI Mer information (2015). Proteochemometric model for predicting the inhibition of penicillin-binding proteins.
- GigaScience, vol. 4 DOI Mer information (2015). A quantitative assessment of the Hadoop framework for analyzing massively parallel DNA sequencing data.
- Journal of Chemical Information and Modeling, vol. 55, ss. 19-25 DOI Mer information (2015). Scaling predictive modeling in drug development with cloud computing.
- Journal of Chemical Information and Modeling, vol. 54, ss. 3211-3217 DOI Mer information (2014). Benchmarking Study of Parameter Variation When Using Signature Fingerprints Together with Support Vector Machines.
- Journal of Chemical Information and Modeling, vol. 54, ss. 2647-2653 DOI Mer information (2014). Ligand-Based Target Prediction with Signature Fingerprints.
- Scandinavian Journal of Rheumatology, vol. 43, ss. 25-26 Mer information (2014). Adalimumab (Humira (R)) normalizes melanocortin receptor subtype 2, 3, and 4 expression in CD8+, CD14+, and CD19+leucocyte subsets in rheumatoid arthritis.
- J CHEM INF MODEL, vol. 54, ss. 837-843 DOI Mer information (2014). Choosing Feature Selection and Learning Algorithms in QSAR.
- Journal of Organic Chemistry, vol. 79, ss. 4148-4153 DOI Mer information (2014). Semisynthesis of Libiguin A and Its Analogues by Trans-Lactonization of Phragmalin.
- Journal of Computational Chemistry, vol. 35, ss. 1951-1966 DOI Mer information (2014). Illuminating the Origins of Spectral Properties of Green Fluorescent Proteins via Proteochemometric and Molecular Modeling.
- Planta Medica, vol. 80, ss. 306-314 DOI Mer information (2014). Libiguins A and B: Novel Phragmalin Limonoids Isolated from Neobeguea mahafalensis Causing Profound Enhancement of Sexual Activity.
- Mini-Reviews in medical chemistry, vol. 13, ss. 720-729 DOI Mer information (2013). On Mechanisms of Reactive Metabolite Formation from Drugs.
- Biochemistry (Moscow), vol. 78, ss. 920-924 DOI Mer information (2013). A straightforward experimental approach to expression, purification, refolding, and enzymatic analysis of recombinant dengue virus NS2B(H)-NS3pro protease.
- Biochemistry (Moscow), vol. 78, ss. 925-932 DOI Mer information (2013). Modulation of enzymatic activity of dengue virus nonstructural protein NS3 nucleoside triphosphatase/helicase by poly(U).
- GigaScience, vol. 2, ss. 1-10 DOI Mer information (2013). Lessons learned from implementing a national infrastructure in Sweden for storage and analysis of next-generation sequencing data.
- PLoS ONE, vol. 8, ss. e66566- DOI Mer information (2013). A Unified Proteochemometric Model for Prediction of Inhibition of Cytochrome P450 Isoforms.